miRBase entry: aly-MIR4226

Stem-loop aly-MIR4226


Accession
MI0015787
Description
Arabidopsis lyrata aly-MIR4226 precursor miRNA


Sequence

aagcaaugaauaguacauugUACAAGAUGCAUUCGAGCAAUAaaugaguuugcaugcccucguggcuuuguucuuccaaccauuuuuguuugucaucaucugauacccucacccaaacucauuuauugcucgcauucguuuguacaauguacaaacucaauugaga
............((((((((((((.((((.((.(((((((((((((((((((...(((.....)))........................(((((.....)))))........))))))))))))))))))).)).))))))))))))))))...(((....))).

Structure
--aagcaaugaaua            A    C  U                   caugcccucguggcuuuguucuuccaaccauuuuuguu     u 
              guacauugUACA GAUG AU CGAGCAAUAaaugaguuug                                      uguca c
              |||||||||||| |||| || |||||||||||||||||||                                      ||||| a
              cauguaacaugu uugc ua gcucguuauuuacucaaac                                      auagu u
agaguuaacucaaa            -    u  c                   ------------------------------ccacuccc     c 


Annotation confidence Not enough data
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Genome context
GL348714.1: 1204559-1204724 [+]

Database links

Mature aly-miR4226

Accession MIMAT0017914
Description Arabidopsis lyrata aly-miR4226 mature miRNA
Sequence 21 - UACAAGAUGCAUUCGAGCAAUA - 42
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103