miRBase entry: aly-MIR4227

Stem-loop aly-MIR4227


Accession
MI0015788
Description
Arabidopsis lyrata aly-MIR4227 precursor miRNA
Gene family
MIPF0001115; MIR4227


Sequence

1 reads, 35 reads per million, 1 experiments
guucacacgacaacacaauuUCAUUUGUGCCAAUCAUUCUAacaaaguauaccucggucucagugauggcauacuuugcuggauugauugguacacaugaaauugugauguuaucggcagua
........((((.(((((((((((.(((((((((((.((((.((((((((.(((((.......))).)).)))))))).)))).))))))))))).))))))))))).))))..........

Structure
--guucacac    a           U           U    a        a  -   gu 
          gaca cacaauuUCAU UGUGCCAAUCA UCUA caaaguau cc ucg  c
          |||| ||||||||||| ||||||||||| |||| |||||||| || |||  u
          uugu guguuaaagua acaugguuagu aggu guuucaua gg agu  c
augacggcua    a           c           u    c        c  u   ga 


Annotation confidence Not enough data
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Genome context
GL348714.1: 2959485-2959606 [-]

Database links

Mature aly-miR4227

Accession MIMAT0017915
Description Arabidopsis lyrata aly-miR4227 mature miRNA
Sequence 21 - UCAUUUGUGCCAAUCAUUCUA - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103