miRBase entry: aly-MIR4232

Stem-loop aly-MIR4232


Accession
MI0015794
Description
Arabidopsis lyrata aly-MIR4232 precursor miRNA


Sequence

uuucauuuuacaaaaauagcuauguauaccugggggucugaaucacuucauucaauaccaagaaaaaggaccgguuaacauaucguuauccaaaccgguugauUCACAUUUAUUAGGAUGUGUGCucgcauugaaaaugagugag
.((((((((.(((....(((.((((((.(((((.(((.((((((((((..(((........)))..)))(((((((...(((....)))...)))))))))))))).)))..))))))))))))))....)))))))))))....

Structure
---u        a   aaau   u      a     -g   c       cuucauucaauaccaagaaaaagg       aac   u 
    uucauuuu caa    agc auguau ccugg  ggu ugaauca                        accgguu   aua c
    |||||||| |||    ||| |||||| |||||  ||| |||||||                        |||||||   |||  
    gaguaaaa guu    uCG UGUGUA GGAUU  UUA ACUuagu                        uggccaa   uau g
gagu        -   acgc   -      -     AU   C       ------------------------       acc   u 


Annotation confidence Not enough data
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Genome context
GL348716.1: 23154953-23155097 [+]

Database links

Mature aly-miR4232

Accession MIMAT0017921
Description Arabidopsis lyrata aly-miR4232 mature miRNA
Sequence 104 - UCACAUUUAUUAGGAUGUGUGC - 125
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103