Stem-loop aly-MIR4246

Accession

MI0015808

Description

Arabidopsis lyrata aly-MIR4246 precursor miRNA

Sequence

reads, None reads per million, experiments

ucacucauacagcagaaaccAAAUCCAAUUUUCAUUGCUUAAaccuguguuuaauuuuguugcaagauuuaagcaaugaaaugggauuugguuuccgcgguuggagcggua
((.(((..((.((.((((((((((((...((((((((((((((.((.(((...........))))).))))))))))))))..)))))))))))).)).))..))).))..

Structure

--  a   au  a  a            AAU              c  g   uuaa 
  uc cuc  ac gc gaaaccAAAUCC   UUUCAUUGCUUAAa cu ugu    u
  || |||  || || ||||||||||||   |||||||||||||| || |||    u
  gg gag  ug cg cuuugguuuagg   aaaguaacgaauuu ga acg    u
au  c   gu  g  c            -gu              a  -   uugu 

Annotation confidence Not enough data

Genome context

GL348720.1: 15703857-15703967 [+]

Mature aly-miR4246

• Accession: MIMAT0017935
• Description: Arabidopsis lyrata aly-miR4246 mature miRNA
• Sequence: 21 - AAAUCCAAUUUUCAUUGCUUAA - 42
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103