miRBase entry: aly-MIR4247

Stem-loop aly-MIR4247


Accession
MI0015809
Description
Arabidopsis lyrata aly-MIR4247 precursor miRNA


Sequence

11 reads, 384 reads per million, 1 experiments
aaauuauaauuccuugaauaUGUAUCCUAAUAUUAGACCCCcauuuaguuuuauuuaugaacauggaauuugcaaggaaacaauauaauacuuaaugggggucuauuauuaggauacauuuucauggaacaauaauuuug
(((((((..((((.((((.(((((((((((((.((((((((((((.(((.((((.......(.((.......)).)........)))).))).)))))))))))).))))))))))))).)))).))))..)))))))..

Structure
--       aa    u    u             U            u   u    -uuaugaa a  ga 
  aaauuau  uucc ugaa aUGUAUCCUAAUA UAGACCCCcauu agu uuau        c ug  a
  |||||||  |||| |||| ||||||||||||| |||||||||||| ||| ||||        | ||  u
  uuuaaua  aagg acuu uacauaggauuau aucuggggguaa uca aaua        g ac  u
gu       ac    u    u             u            u   u    uaacaaag a  gu 


Annotation confidence Not enough data
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Genome context
GL348720.1: 21909877-21910016 [-]

Database links

Mature aly-miR4247

Accession MIMAT0017936
Description Arabidopsis lyrata aly-miR4247 mature miRNA
Sequence 21 - UGUAUCCUAAUAUUAGACCCC - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103