Stem-loop aly-MIR4249

Accession

MI0015813

Description

Arabidopsis lyrata aly-MIR4249 precursor miRNA

Sequence

uacacauuucuuguucagguUGAAUUUGAGAAGUUGAGGUAgguuuaccaacucuugaauuucucacacucucgaucaaguuucucuuaucgaguuugguuucucaaacccaccucaaauucuccaauuccaccagaaccuuaaaaaucuuua
............((((.(((.(((((.(((((.(((((((.((((((((((....(((.....)))....((((((.(((.....))))))))).))))).....))))).))))))).))))).))))).))).))))..............

Structure

--uacacauuucuu    a   U     U     G       A     -----     cucuugaauuucucacacu      c   u 
              guuc ggu GAAUU GAGAA UUGAGGU gguuu     accaa                   cucgau aag u
              |||| ||| ||||| ||||| ||||||| |||||     |||||                   |||||| ||| u
              caag cca cuuaa cucuu aacucca ccaaa     ugguu                   gagcua uuc c
auuucuaaaaauuc    a   c     c     a       c     cucuu     ------------------u      -   u 

Annotation confidence Not enough data

Genome context

GL348714.1: 2250562-2250714 [-]

Mature aly-miR4249

• Accession: MIMAT0017940
• Description: Arabidopsis lyrata aly-miR4249 mature miRNA
• Sequence: 21 - UGAAUUUGAGAAGUUGAGGUA - 41
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103