miRBase entry: aly-MIR4250

Stem-loop aly-MIR4250


Accession
MI0015814
Description
Arabidopsis lyrata aly-MIR4250 precursor miRNA


Sequence

6 reads, 209 reads per million, 1 experiments
cguugcuucaugaucaguccUCCAAAGGCACAAGAACAUCAaauaggugacaccaagauguguuuguuugguuucaccuauuugauguucuugcccuuuaggaggauugaucuugccacaacccu
.((((...((.(((((((((((((((((..((((((((((((((((((((.((((((.........)))))).)))))))))))))))))))).))))).)))))))))))).))...))))...

Structure
--c    cuu  u            -     CA                    c      aug 
   guug   ca gaucaguccUCC AAAGG  CAAGAACAUCAaauagguga accaag   u
   ||||   || |||||||||||| |||||  |||||||||||||||||||| ||||||   g
   caac   gu cuaguuaggagg uuucc  guucuuguaguuuauccacu ugguuu   u
ucc    acc  u            a     -c                    u      guu 


Annotation confidence Not enough data
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Genome context
GL348714.1: 17310952-17311076 [-]

Database links

Mature aly-miR4250

Accession MIMAT0017941
Description Arabidopsis lyrata aly-miR4250 mature miRNA
Sequence 21 - UCCAAAGGCACAAGAACAUCA - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103