miRBase entry: ath-MIR4227

Stem-loop ath-MIR4227


Accession
MI0015816
Description
Arabidopsis thaliana ath-MIR4227 precursor miRNA
Gene family
MIPF0001115; MIR4227


Sequence

guucacacgacaacacaauuUCACUGGUACCAAUCAUUCCAacaaauuauaacucggucucagggauuguauauuuuguuggauugauugguaacaugaaauuuugaauuuuugaauuuuu
(((((........((.(((((((.((.(((((((((.(((((((((.((((...((((((...)))))))))).))))))))).))))))))).))))))))).))......)))))....

Structure
----     cacgacaa  c       C  G         U         u    acu      c 
    guuca        ca aauuUCA UG UACCAAUCA UCCAacaaa uaua   cggucu  
    |||||        || ||||||| || ||||||||| ||||||||| ||||   |||||| a
    uaagu        gu uuaaagu ac augguuagu agguuguuu auau   guuagg  
uuuu     --uuuuaa  u       -  a         u         u    ---      g 


Annotation confidence Not enough data
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Genome context
chr1: 22372670-22372790 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR4227
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR4227

Accession MIMAT0017943
Description Arabidopsis thaliana ath-miR4227 mature miRNA
Sequence 21 - UCACUGGUACCAAUCAUUCCA - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103