miRBase entry: ssc-mir-652

Stem-loop ssc-mir-652


Accession
MI0015919
Description
Sus scrofa ssc-mir-652 precursor miRNA
Gene family
MIPF0000333; mir-652

Literature search
2 open access papers mention ssc-mir-652
(8 sentences)

Sequence

13 reads, 34 reads per million, 8 experiments
uaugcacugcACAACCCUAGGAGAGGGUGCCAUUCAcauagacuauaauugaauggcgccacuaggguugugcagugcacaac
..((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))....

Structure
--ua                  GAGAG           ca  g 
    ugcacugcACAACCCUAG     GGUGCCAUUCA  ua a
    ||||||||||||||||||     |||||||||||  || c
    acgugacguguugggauc     ccgcgguaagu  au u
caac                  ----a           ua  a 


Annotation confidence Not enough data
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Genome context
chrUScaf2837: 52753-52835 [-]

Database links

Mature ssc-miR-652

Accession MIMAT0017964
Description Sus scrofa ssc-miR-652 mature miRNA
Sequence 11 - ACAACCCUAGGAGAGGGUGCCAUUCA - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275