Stem-loop sequence bta-mir-148c

Accession

MI0015944 (change log)

Description

Bos taurus miR-148c stem-loop

Gene family

MIPF0001027; mir-2957

Literature search

16 open access papers mention bta-mir-148c
(27 sentences)

Stem-loop

   cg      a       c       --    ---   c 
5'   ggccca guucugu augcacu  gacu   gcu c
     |||||| ||||||| |||||||  ||||   |||  
3'   ccgggu caagaca uauguga  cuga   cga a
   gg      c       c       gg    gcc   g 

Deep sequencing

8 reads, 0 reads per million, 7 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 39247037-39247107 [-]
• Overlapping transcripts:

  antisense

  ENSBTAT00000056479 ; COPZ2-201; intron 1

  ENSBTAT00000050861 ; bta-mir-152-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-148c

• bta-mir-148c: chr19: 39247037-39247107 [-]
• bta-mir-152: chr19: 39247030-39247115 [+]

Database links

• EntrezGene:MIR2957
• miRBase Tracker:MI0015944

Mature sequence bta-miR-148c

• Accession: MIMAT0016933
• Sequence: 6 - ccaaguucugucaugcacuga - 26
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2957

References

1. PMID:19765282 "Identification and characterization of miRNAs expressed in the bovine ovary" Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D BMC Genomics. 10:443(2009).