miRBase entry: cbr-mir-357-2

Stem-loop cbr-mir-357-2


Accession
MI0015958
Description
Caenorhabditis briggsae cbr-mir-357-2 precursor miRNA
Gene family
MIPF0000227; mir-357


Sequence

cuacaucagaagagacagcgaaucccggcaaucaccgugcauuuucaucuaccagaggcacuaaugAAAAUGCCAGUCAUUGACGGAauucguugaaucuggaauuaaagcau
..........(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)))).))).))))))))..))).............

Structure
---cuacaucaga   ga        c   g    c  c u          --cua  a 
             aga  cagcgaau ccg caau ac g gcauuuucau     cc  
             |||  |||||||| ||| |||| || | ||||||||||     || g
             ucu  guugcuua GGC GUUA UG C CGUAAAAgua     gg  
uacgaaauuaagg   aa        A   A    C  A -          aucac  a 


Annotation confidence Not enough data
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Comments
This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 4 positions.

Genome context
chrV: 1198325-1198437 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-357-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-357

Accession MIMAT0001298
Description Caenorhabditis briggsae cbr-miR-357 mature miRNA
Sequence 67 - AAAAUGCCAGUCAUUGACGGA - 87
Evidence not_experimental

References

  1. PubMed ID: 15317971
    Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
    "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
    "RNA (2004) 10:1309-1322