Stem-loop sequence rno-mir-295-2

Accession

MI0015968 (change log)

Description

Rattus norvegicus miR-295-2 stem-loop

Gene family

MIPF0000068; mir-290

Literature search

3 open access papers mention rno-mir-295-2
(7 sentences)

Stem-loop

   --   uuu  u  g       u    -     ac     - au 
5'   cau   gg ga acucaaa gugg ggcac  uucug g  u
     |||   || || ||||||| |||| |||||  ||||| |   
3'   gug   cc cu uggguuu cauc ucgug  aagau c  a
   gg   --u  u  g       u    a     -a     g gu 

Deep sequencing

226 reads, 0 reads per million, 50 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 66133312-66133392 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir295
• EntrezGene:Mir295-2
• miRBase Tracker:MI0015968

Mature sequence rno-miR-295-5p

• Accession: MIMAT0012849
• Previous IDs: rno-miR-295
• Sequence: 13 - acucaaauguggggcacacuucu - 35
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-295-5p
  • miRDB:rno-miR-295-5p
  • microrna.org:rno-miR-295-5p

Mature sequence rno-miR-295-3p

• Accession: MIMAT0017366
• Previous IDs: rno-miR-295*
• Sequence: 50 - aagugcuacuacuuuugggugu - 71
• Deep sequencing: 450 reads, 49 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-295-3p
  • miRDB:rno-miR-295-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).