miRBase entry: nve-mir-2040a-2

Stem-loop nve-mir-2040a-2


Accession
MI0015988
Description
Nematostella vectensis nve-mir-2040a-2 precursor miRNA
Gene family
MIPF0000713; mir-2040


Sequence

282 reads, 1089 reads per million, 19 experiments
gaucgugaugccuacaaccuUCGGGUCAGCUACGACAUGAGCGcuccucgUUUGUCUCGUAACUGCCCUGAAGguaguccuggcgucuuuac
......((((((.((.(((((((((.(((.(((((.(((((((.....))))))).))))).))).))))))))).))...)))))).....

Structure
gaucgu      --u  a         U   C     C       c 
      gaugcc   ac accuUCGGG CAG UACGA AUGAGCG u
      ||||||   || ||||||||| ||| ||||| ||||||| c
      cugcgg   ug ugGAAGUCC GUC AUGCU UGUUUgc c
-cauuu      ucc  a         C   A     C       u 


Annotation confidence High
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Genome context
scaffold_108: 92997-93088 [-]

Database links

Mature nve-miR-2040a-5p

Accession MIMAT0009802
Description Nematostella vectensis nve-miR-2040a-5p mature miRNA
Sequence 21 - UCGGGUCAGCUACGACAUGAGCG - 43
Evidence experimental
454 [1]

Mature nve-miR-2040a-3p

Accession MIMAT0009803
Description Nematostella vectensis nve-miR-2040a-3p mature miRNA
Sequence 51 - UUUGUCUCGUAACUGCCCUGAAG - 73
Evidence experimental
454 [1]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197