Stem-loop sequence hsa-mir-3606

Accession MI0015996
Description Homo sapiens miR-3606 stem-loop
Stem-loop 
uuguugcuau      u        cu       u 
          cuaggu agugaagg  auuuuaa u
          |||||| ||||||||  ||||||| u
          gauuca ucacuuuc  uaaaauu u
---------g      -        uu       u
Get sequence
Deep sequencing
13 reads, 7 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr2: 189860356-189860418 [+]
sense
OTTHUMT00000255899 ; COL3A1-001; intron 21
OTTHUMT00000255899 ; COL3A1-001; intron 21
OTTHUMT00000255899 ; COL3A1-001; intron 21
ENST00000304636 ; COL3A1-001; intron 21
ENST00000317840 ; COL3A1-201; intron 21
ENST00000304636 ; COL3A1-001; intron 21
ENST00000317840 ; COL3A1-201; intron 21
ENST00000304636 ; COL3A1-001; intron 21
ENST00000317840 ; COL3A1-201; intron 21
Database links

Mature sequence hsa-miR-3606-5p

Accession MIMAT0017983
Previous IDs hsa-miR-3606
Sequence

16 -  

uuagugaaggcuauuuuaauu

 - 36

Get sequence
Deep sequencing 9 reads, 5 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence hsa-miR-3606-3p

Accession MIMAT0022965
Sequence

42 -  

aaaauuucuuucacuacuuag

 - 62

Get sequence
Deep sequencing 2 reads, 2 experiments
Evidence not experimental

References

1
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).