miRBase entry: vvi-MIR3623

Stem-loop vvi-MIR3623


Accession
MI0016015
Description
Vitis vinifera vvi-MIR3623 precursor miRNA

Literature search
1 open access papers mention vvi-MIR3623
(3 sentences)

Sequence

31252 reads, 2097 reads per million, 2 experiments
aagaauuuugaugaucuUCACAAGUUCAUCCAAGCACCAucuaaagcucaaacaggccuacgguuuucuucaaaacuaggcuuauucaugaUGGUGCUUGGACGAAUUUGCUAagaacauuaaguucuu
((((((((.((((.((((..(((((((.(((((((((((((............((((((..((((((....))))))))))))......))))))))))))).)))))))..)))).))))))))))))

Structure
        u    a    CA       A             uaaagcucaaac      ac      c 
aagaauuu gaug ucuU  CAAGUUC UCCAAGCACCAuc            aggccu  gguuuu u
|||||||| |||| ||||  ||||||| |||||||||||||            ||||||  ||||||  
uucuugaa uuac agaA  GUUUAAG AGGUUCGUGGUag            uucgga  ucaaaa u
        -    a    UC       C             ------uacuua      --      c 


Annotation confidence High
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Genome context
chr18: 24650012-24650140 [+]

Database links

Mature vvi-miR3623-5p

Accession MIMAT0018007
Description Vitis vinifera vvi-miR3623-5p mature miRNA
Sequence 18 - UCACAAGUUCAUCCAAGCACCA - 39
Evidence experimental
Illumina [1]

Mature vvi-miR3623-3p

Accession MIMAT0018008
Description Vitis vinifera vvi-miR3623-3p mature miRNA
Sequence 92 - UGGUGCUUGGACGAAUUUGCUA - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976