miRBase entry: vvi-MIR3628

Stem-loop vvi-MIR3628


Accession
MI0016021
Description
Vitis vinifera vvi-MIR3628 precursor miRNA


Sequence

gaaugauuauuguuguuaaagagauaauggaaagggAUGCGAGAGCCGUGCUUAGUAugccaccuacuaagauuauugaauauauaaaacuucaucugCUAAGCACAGCUCUCGCAUCCcuuuccauuaucucucauggcuucccgguuc
((((.......(((((...(((((((((((((((((((((((((((.((((((((((.......................................)))))))))).))))))))))))))))))))))))))).)))))......))))

Structure
    gauuauu     uaa                           C          ugccaccuacuaagauua 
gaau       guugu   agagauaauggaaagggAUGCGAGAGC GUGCUUAGUA                  u
||||       |||||   ||||||||||||||||||||||||||| ||||||||||                  u
cuug       cggua   ucucuauuaccuuucCCUACGCUCUCG CACGAAUCgu                  g
    -gcccuu     --c                           A          cuacuucaaaauauauaa 


Annotation confidence Not enough data
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Genome context
chr13: 16716055-16716204 [-]

Database links

Mature vvi-miR3628-5p

Accession MIMAT0018019
Description Vitis vinifera vvi-miR3628-5p mature miRNA
Sequence 37 - AUGCGAGAGCCGUGCUUAGUA - 57
Evidence experimental
Illumina [1]

Mature vvi-miR3628-3p

Accession MIMAT0018020
Description Vitis vinifera vvi-miR3628-3p mature miRNA
Sequence 99 - CUAAGCACAGCUCUCGCAUCC - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976