miRBase entry: dme-mir-3642

Stem-loop dme-mir-3642


Accession
MI0016042
Description
Drosophila melanogaster dme-mir-3642 precursor miRNA


Sequence

20 reads, 7 reads per million, 15 experiments
GUGAGUGGGUCGCACGGAGCGUcauuuggaauucccauggcugacGAAACGUUCACUCUGCUCUUCUcgauuacag
..((((((((.(.(((...(((((..(((.....)))....)))))...))).))).)))))).............

Structure
-----------GU      -  C C   GAG     --uu   a 
             GAGUGG GU G ACG   CGUca    ugg a
             |||||| || | |||   |||||    ||| u
             CUCGUC CA C UGC   Gcagu    acc u
gacauuagcUCUU      U  - U   AAA     cggu   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3L: 11629505-11629580 [+]

Database links

Mature dme-miR-3642-5p

Accession MIMAT0018057
Description Drosophila melanogaster dme-miR-3642-5p mature miRNA
Sequence 1 - GUGAGUGGGUCGCACGGAGCGU - 22
Evidence experimental
Illumina [1]

Mature dme-miR-3642-3p

Accession MIMAT0018058
Description Drosophila melanogaster dme-miR-3642-3p mature miRNA
Sequence 46 - GAAACGUUCACUCUGCUCUUCU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20620959
    MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila
    "Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC"
    "Mol Cell (2010) 38:900-907