Stem-loop sequence dme-mir-3643

Accession MI0016043
Description Drosophila melanogaster miR-3643 stem-loop
Stem-loop 
--------------gu    u  uc   a    c c   u 
                gagu ua  uaa uaug c auu a
                |||| ||  ||| |||| | |||  
                cucg au  auu auac g uaa u
gacguuccucaauuuc    u  uu   c    u a   c
Get sequence
Deep sequencing
13 reads, 7 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2R: 13653898-13653965 [-]
sense
FBtr0089559 ; CG6370-RA; intron 2
FBtr0089559 ; CG6370-RA; intron 2
FBtr0089559 ; CG6370-RA; intron 2

Mature sequence dme-miR-3643-5p

Accession MIMAT0018059
Previous IDs dme-miR-3643*
Sequence

1 -  

gugaguuuaucuaaauaugccc

 - 22

Get sequence
Deep sequencing 2 reads, 2 experiments
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence dme-miR-3643-3p

Accession MIMAT0018060
Previous IDs dme-miR-3643
Sequence

35 -  

ucauacuuauuuaugcuccuuu

 - 56

Get sequence
Deep sequencing 11 reads, 7 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20620959 "MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila" Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC Mol Cell. 38:900-907(2010).