Stem-loop sequence hsa-mir-3664

Accession

MI0016065 (change log)

Symbol

HGNC:MIR3664

Description

Homo sapiens miR-3664 stem-loop

Gene family

MIPF0001518; mir-3664

Stem-loop

   cuguaa  -                       c    a    uac   cc 
5'       ac uugaagguagggaacucugucuu acuc ugag   cuu  a
         || ||||||||||||||||||||||| |||| ||||   |||  a
3'       ug aacuuccaucccuugagacagaa ugag acuc   gag  c
   --uagg  u                       a    g    -uc   ca 

Deep sequencing

1213 reads, 0.962 reads per million, 104 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 70872270-70872368 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000259336 ; SHANK2-010; intron 3

  ENST00000413503 ; SHANK2-010; intron 3

Database links

• EntrezGene:MIR3664
• HGNC:MIR3664
• RNAcentral:URS000075991E_9606
• miRBase Tracker:MI0016065

Mature sequence hsa-miR-3664-5p

• Accession: MIMAT0018086
• Previous IDs: hsa-miR-3664
• Sequence: 21 - aacucugucuucacucaugagu - 42
• Deep sequencing: 108 reads, 40 experiments
• Evidence: experimental; Northern [1], Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3664-5p
  • TargetScanVert:hsa-miR-3664-5p
  • miRDB:hsa-miR-3664-5p

Mature sequence hsa-miR-3664-3p

• Accession: MIMAT0019220
• Sequence: 59 - ucucaggaguaaagacagaguu - 80
• Deep sequencing: 895 reads, 102 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000043C1C3_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3664-3p
  • TargetScanVert:hsa-miR-3664-3p
  • miRDB:hsa-miR-3664-3p

References

1. PMID:20532037 "Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes" Hansen TB, Bramsen JB, Kjems J PLoS One. 5:e10961(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).