Stem-loop sequence hsa-mir-3677

Accession

MI0016078 (change log)

Symbol

HGNC:MIR3677

Description

Homo sapiens miR-3677 stem-loop

Literature search

3 open access papers mention hsa-mir-3677
(4 sentences)

Stem-loop

      a             ------u  -a      
5' ggc guggccagagccc       gc  gugcu 
   ||| |||||||||||||       ||  |||| g
3' ccg caccggucucggg       cg  uacgg 
      g             ugcucuu  gg      

Deep sequencing

433 reads, 8.43 reads per million, 83 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 2270713-2270772 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3677

• hsa-mir-3677: chr16: 2270713-2270772 [+]
• hsa-mir-940: chr16: 2271747-2271840 [+]
• hsa-mir-4717: chr16: 2274620-2274691 [+]

Database links

• EntrezGene:MIR3677
• HGNC:MIR3677
• RNAcentral:URS000075A213_9606
• miRBase Tracker:MI0016078

Mature sequence hsa-miR-3677-5p

• Accession: MIMAT0019221
• Sequence: 3 - caguggccagagcccugcagug - 24
• Deep sequencing: 160 reads, 49 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3677-5p
  • TargetScanVert:hsa-miR-3677-5p
  • miRDB:hsa-miR-3677-5p

Mature sequence hsa-miR-3677-3p

• Accession: MIMAT0018101
• Previous IDs: hsa-miR-3677
• Sequence: 39 - cucgugggcucuggccacggcc - 60
• Deep sequencing: 271 reads, 53 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS0000171020_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3677-3p
  • TargetScanVert:hsa-miR-3677-3p
  • miRDB:hsa-miR-3677-3p

References

1. PMID:20459673 "Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood" Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A BMC Genomics. 11:288(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).