Stem-loop sequence hsa-mir-3688-1

Accession

MI0016089 (change log)

Previous IDs

hsa-mir-3688

Symbol

HGNC:MIR3688-1

Description

Homo sapiens miR-3688-1 stem-loop

Gene family

MIPF0001263; mir-3688

Stem-loop

             c                          au   ugua 
5' ucuucacuuu aagaguggcaaagucuuuccauaugu  gua    u
   |||||||||| ||||||||||||||||||||||||||  |||    g
3' agaagugaaa uucucaccguuucagaaagguauaca  cau    u
             u                          --   uguc 

Deep sequencing

311 reads, 73.2 reads per million, 97 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr4: 159128802-159128894 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000365605 ; TMEM144-008; intron 2

  OTTHUMT00000365604 ; TMEM144-007; intron 2

  OTTHUMT00000365603 ; TMEM144-006; intron 2

  ENST00000505049 ; TMEM144-008; intron 2

  ENST00000505189 ; TMEM144-007; intron 2

  ENST00000511038 ; TMEM144-006; intron 2

Clustered miRNAs

< 10kb from hsa-mir-3688-1

• hsa-mir-3688-2: chr4: 159128805-159128891 [+]
• hsa-mir-3688-1: chr4: 159128802-159128894 [-]

Database links

• EntrezGene:MIR3688
• HGNC:MIR3688-1
• RNAcentral:URS000075CA84_9606
• miRBase Tracker:MI0016089

Mature sequence hsa-miR-3688-5p

• Accession: MIMAT0019223
• Sequence: 15 - aguggcaaagucuuuccauau - 35
• Deep sequencing: 46 reads, 7 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3688-5p
  • TargetScanVert:hsa-miR-3688-5p
  • miRDB:hsa-miR-3688-5p

Mature sequence hsa-miR-3688-3p

• Accession: MIMAT0018116
• Previous IDs: hsa-miR-3688
• Sequence: 60 - uauggaaagacuuugccacucu - 81
• Deep sequencing: 443 reads, 80 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000032B492_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3688-3p
  • TargetScanVert:hsa-miR-3688-3p
  • miRDB:hsa-miR-3688-3p

References

1. PMID:20459673 "Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood" Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A BMC Genomics. 11:288(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).