miRBase entry: pab-MIR3698

Stem-loop pab-MIR3698


Accession
MI0016100
Description
Picea abies pab-MIR3698 precursor miRNA


Sequence

ucuggcuguaCUUGCAACUCUGCCUUGGCUUAugggagacgcucucugccuuagcuuauagcacacugccauaggcaaaguagaguugcaaguccagcaaga
(((.((((.((((((((((((((....((((((((.((..(((....((....))....)))...)).))))))))...)))))))))))))).)))).)))

Structure
   g    u              CUUG        g  -ac   cucu  c 
ucu gcug aCUUGCAACUCUGC    GCUUAugg ag   gcu    gc u
||| |||| ||||||||||||||    |||||||| ||   |||    ||  
aga cgac ugaacguugagaug    cggauacc uc   cga    cg u
   a    c              -aaa        g  aca   uauu  a 


Annotation confidence Not enough data
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Genome context
MA_916243: 6357-6458 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR3698
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR3698

Accession MIMAT0018130
Description Picea abies pab-miR3698 mature miRNA
Sequence 11 - CUUGCAACUCUGCCUUGGCUUA - 32
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169