miRBase entry: pab-MIR3701b

Stem-loop pab-MIR3701b


Accession
MI0016103
Description
Picea abies pab-MIR3701b precursor miRNA
Gene family
MIPF0001553; MIR3701

Literature search
1 open access papers mention pab-MIR3701b
(4 sentences)

Sequence

ugccacagaCGAAGGGUAAGCGUUGUUUGGCagaagaguuuucucuguugcagaacauagaggauuugccaaaauuaucgucaucaaaugaaaaggcuccaguagcuuuauugcaauuuguuuggcaauagccucuauguucuuugaauguaaaaacucuucucuUAAACAAUGCCCACCCUUCAUCucuggaca
..(((.(((.(((((((..(((((((((((.(((((((((((..(..(((.((((((((((((..((((((((...........(((((...((((((.....))))))......)))))))))))))...)))))))))))).)))..)..))))))))))).)))))))))))..))))))).))).)))...

Structure
-ug   c   C       AA           C           cu ug   c            -au        auuaucgucau     ---gaa      c 
   cca aga GAAGGGU  GCGUUGUUUGG agaagaguuuu  c  uug agaacauagagg   uugccaaa           caaau      aaggcu c
   ||| ||| |||||||  ||||||||||| |||||||||||  |  ||| ||||||||||||   ||||||||           |||||      |||||| a
   ggu uCU CUUCCCA  CGUAACAAAUu ucuucucaaaa  g  agu ucuuguaucucc   aacgguuu           guuua      uuucga g
aca   c   A       CC           c           au ua   u            gau        -----------     acguua      u 


Annotation confidence Not enough data
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Genome context
MA_10436756: 14222-14416 [-]

Database links

Mature pab-miR3701b-3p

Accession MIMAT0018133
Description Picea abies pab-miR3701b-3p mature miRNA
Sequence 166 - UAAACAAUGCCCACCCUUCAUC - 187
Evidence experimental
cloned [1], Illumina [2]

Mature pab-miR3701b-5p

Accession MIMAT0037383
Description Picea abies pab-miR3701b-5p mature miRNA
Sequence 10 - CGAAGGGUAAGCGUUGUUUGGC - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169

  2. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918