miRBase entry: pab-MIR160a

Stem-loop pab-MIR160a


Accession
MI0016116
Description
Picea abies pab-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
1 open access papers mention pab-MIR160a
(1 sentences)

Sequence

aaagguugaugugUGCCUGGCUCCCUGUAUGCCAcauacaaggcccagucauauguugauuggcuucauagguggcuuacaaggagccaagcauacguuuucuuac
..(((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)))))))))..)))..

Structure
aa   uu         C       C    U     a  ca     c     u 
  agg  gaugugUGC UGGCUCC UGUA GCCAc ua  aggcc aguca a
  |||  ||||||||| ||||||| |||| ||||| ||  ||||| ||||| u
  uuc  uugcauacg accgagg acau cggug au  uucgg uuagu g
ca   uu         a       a    u     g  ac     -     u 


Annotation confidence Not enough data
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Genome context
MA_10961: 17646-17751 [-]

Database links

Mature pab-miR160a

Accession MIMAT0018146
Description Picea abies pab-miR160a mature miRNA
Sequence 14 - UGCCUGGCUCCCUGUAUGCCA - 34
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169