miRBase entry: pab-MIR166b

Stem-loop pab-MIR166b


Accession
MI0016119
Description
Picea abies pab-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention pab-MIR166b
(3 sentences)

Sequence

uuucagaguugggauaucgggaaugaaaccugggucaagaugauuugaaggcaggcuguugaagauuaucUCGGACCAGGCUUCAUUCCUUgcauccaaacucuucaaguacuguugcucaauugaaaa
....((((((.((((...(((((((((.(((((..(.(((((((((...((((...))))..))))))))).)..))))).)))))))))...)))).))))))(((((((....))))....)))...

Structure
---------------------uuuc      g    auc         a     gu a         gaa    g 
                         agaguu ggau   gggaaugaa ccugg  c agaugauuu   ggca  
                         |||||| ||||   ||||||||| |||||  | |||||||||   |||| g
                         ucucaa ccua   UCCUUACUU GGACC  G Ucuauuaga   uugu  
aaaaguuaacucguugucaugaacu      a    cgU         C     AG C         -ag    c 


Annotation confidence Not enough data
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Genome context
MA_69761: 2483-2611 [+]

Database links

Mature pab-miR166b

Accession MIMAT0018149
Description Picea abies pab-miR166b mature miRNA
Sequence 71 - UCGGACCAGGCUUCAUUCCUU - 91
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169