Stem-loop pab-MIR482d

Accession

MI0016120

Description

Picea abies pab-MIR482d precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

1 open access papers mention pab-MIR482d
(5 sentences)

Sequence

aaggccaaaGGCUUGCGAGGAUAGGAAAAAcucgugugguguuguauuuucucacucaccgaucuacaguuUUUCCCACUCCUCCCAAGCCCAuggccuu
(((((((..((((((.(((((..(((((((((.((((((((.((........))..)))))...))))))))))))...))))).))))))..)))))))

Structure

       aa      C     -UA         c   ---     -u  uau 
aaggcca  GGCUUG GAGGA   GGAAAAAcu gug   uggug  ug   u
|||||||  |||||| |||||   ||||||||| |||   |||||  ||    
uuccggu  CCGAAC CUCCU   CCUUUuuga cau   gccac  ac   u
       AC      C     CAC         -   cua     uc  ucu 

Annotation confidence Not enough data

Genome context

MA_482332: 4278-4377 [-]

Mature pab-miR482d-5p

• Accession: MIMAT0018150
• Description: Picea abies pab-miR482d-5p mature miRNA
• Sequence: 10 - GGCUUGCGAGGAUAGGAAAAA - 30
• Evidence: experimental ; cloned [1]

Mature pab-miR482d-3p

• Accession: MIMAT0037384
• Description: Picea abies pab-miR482d-3p mature miRNA
• Sequence: 72 - UUUCCCACUCCUCCCAAGCCCA - 93
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169


2. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918