miRBase entry: pab-MIR396b

Stem-loop pab-MIR396b


Accession
MI0016123
Description
Picea abies pab-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
1 open access papers mention pab-MIR396b
(5 sentences)

Sequence

ucauaguuUUCCACGGCUUUCUUGAACUUacuucacgauccgguguguuggcugccgaucgcaucgauaacagauccgggugacaagaucaagaaagccgugggaaauuauagagg
(((((((((((((((((((((((((.(((...(((((((((((((((((((...)))).)))))))......))))...)))).))).))))))))))))))))))))))).))..

Structure
--  -                       A   acu    ---    ------       -    c 
  uc auaguuUUCCACGGCUUUCUUGA CUU   ucac   gauc      cggugug uugg  
  || ||||||||||||||||||||||| |||   ||||   ||||      ||||||| |||| u
  ag uauuaaagggugccgaaagaacu gaa   agug   cuag      gcuacgc agcc  
gg  a                       a   --c    ggc    acaaua       u    g 


Annotation confidence Not enough data
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Genome context
MA_536062: 4037-4152 [+]

Database links

Mature pab-miR396b

Accession MIMAT0018153
Description Picea abies pab-miR396b mature miRNA
Sequence 9 - UUCCACGGCUUUCUUGAACUU - 29
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169