Stem-loop pab-MIR397b

Accession

MI0016125

Description

Picea abies pab-MIR397b precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

1 open access papers mention pab-MIR397b
(2 sentences)

Sequence

agccguggcaaccacaUCAUUGAGUGCAGCGUUGACGauagaaauuccaccaauagauuugauaauaucuaucuauuuguggaaugccauugauauuguuaacccugcacucaauaguauguuugccaauggcu
(((((((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)))))))))).))))))))))).)).)).))))).))))))

Structure

      -     c  c  C           C          -----gaa       c       uu   a 
agccgu ggcaa ca aU AUUGAGUGCAG GUUGACGaua        auuccac aauagau  gau  
|||||| ||||| || || ||||||||||| ||||||||||        ||||||| |||||||  ||| a
ucggua ccguu gu ug uaacucacguc caauuguuau        uaaggug uuaucua  cua  
      a     u  a  a           c          aguuaccg       u       -u   u 

Annotation confidence Not enough data

Genome context

MA_11748: 25993-26126 [-]

Mature pab-miR397b

• Accession: MIMAT0018155
• Description: Picea abies pab-miR397b mature miRNA
• Sequence: 17 - UCAUUGAGUGCAGCGUUGACG - 37
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169