Stem-loop pab-MIR482a

Accession

MI0016126

Description

Picea abies pab-MIR482a precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

1 open access papers mention pab-MIR482a
(5 sentences)

Sequence

uuggaggaguggaaggauaggguaagacugcgguuaagugagacugcuucaauaauucuuugcucuaaucucaccagUCUUCCCUACUCCUCCCAUUCCuguugccuucaucacaguu
....((((((((.(((((((((.(((((((.......((((((......(((.......)))......)))))))))))))))))).)))).))))))))..................

Structure

--------------uugg        a    -     u       cgguuaa      cugcuu   ua 
                  aggagugg agga uaggg aagacug       gugaga      caa  a
                  |||||||| |||| ||||| |||||||       ||||||      |||  u
                  uCCUUACC UCCU AUCCC UUCUgac       cacucu      guu  u
uugacacuacuuccguug        C    C     -       -------      aaucuc   uc 

Annotation confidence Not enough data

Genome context

MA_10207503: 3934-4051 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR482a

Mature pab-miR482a

• Accession: MIMAT0018156
• Description: Picea abies pab-miR482a mature miRNA
• Sequence: 78 - UCUUCCCUACUCCUCCCAUUCC - 99
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169