Stem-loop pab-MIR482c

Accession

MI0016128

Description

Picea abies pab-MIR482c precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

1 open access papers mention pab-MIR482c
(5 sentences)

Sequence

ugagaagggaauggauguguuuuguggauggaagucuugaggagugggagcagaggauaagacugcugcuuugaauauuaccagUCUUUCCUACUCCUCCCAUUCCuauugccuucaccacacaucccuucccaacg
......(((((.((((((((...(((((.((.(((....(((((((((((.((((((.(((((((................))))))))))).)).)))))))))))))).))))))).)))))))).)))))....

Structure

ugagaa     u        uuu     u  a   cuug           c  -    u       cugcuuu 
      gggaa ggaugugu   gugga gg agu    aggagugggag ag agga aagacug       g
      ||||| ||||||||   ||||| || |||    ||||||||||| || |||| |||||||        
      cccuu ccuacaca   cacuu cc uua    uCCUUACCCUC UC UCCU UUCUgac       a
--gcaa     c        --c     -  g   ----           C  A    -       cauuaua 

Annotation confidence Not enough data

Genome context

MA_945007: 7767-7903 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR482c

Mature pab-miR482c

• Accession: MIMAT0018158
• Description: Picea abies pab-miR482c mature miRNA
• Sequence: 85 - UCUUUCCUACUCCUCCCAUUCC - 106
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169