Stem-loop pab-MIR535e

Accession

MI0016129

Description

Picea abies pab-MIR535e precursor miRNA

Gene family

MIPF0000136; MIR535

Sequence

aaauauccguucuauuccauugcUGACAACGAGAGAGAGCACGCcuguauucucuuauaugaauuuugcauaugugggcguccaugcgugcucucugcuuguagucagcaaagcgacugcaucucaacu
.......((((........((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).))))).))))))))))))..............

Structure

-------aaauauc    cuauucca        A     -           c  u  u   u      aa 
              cguu        uugcUGAC ACGAG AGAGAGCACGC ug au cuc uauaug  u
              ||||        |||||||| ||||| ||||||||||| || || ||| ||||||  u
              gcga        aacgacug uguuc ucucucgugcg ac ug ggg guauac  u
ucaacucuacguca    --------        a     g           u  c  c   u      gu 

Annotation confidence Not enough data

Genome context

MA_886658: 985-1113 [-]

Mature pab-miR535e

• Accession: MIMAT0018159
• Description: Picea abies pab-miR535e mature miRNA
• Sequence: 24 - UGACAACGAGAGAGAGCACGC - 44
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 20561211
   MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
   "Yakovlev IA, Fossdal CG, Johnsen O"
   "New Phytol (2010) 187:1154-1169