miRBase entry: pab-MIR951

Stem-loop pab-MIR951


Accession
MI0016131
Description
Picea abies pab-MIR951 precursor miRNA
Gene family
MIPF0001160; MIR951

Literature search
1 open access papers mention pab-MIR951
(3 sentences)

Sequence

aggaagcgaaggUGUUCUUGACGUCUGGACCACGugguuuacuuuaagauuugcaguaauaacccaucaacuaccgcgguccagucgucaagaacaccuuugcuuuca
.((((((((((((((((((((((.(((((((.(((((((((((.(((...))).))))..........))))).)).))))))).)))))))))))))))))))))).

Structure
a                      U       A  -     ----------    u   g 
 ggaagcgaaggUGUUCUUGACG CUGGACC CG ugguu          uacu uaa  
 |||||||||||||||||||||| ||||||| || |||||          |||| ||| a
 cuuucguuuccacaagaacugc gaccugg gc aucaa          auga guu  
a                      u       c  c     cuacccaaua    c   u 


Annotation confidence Not enough data
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Genome context
MA_17259: 28800-28907 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR951
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR951

Accession MIMAT0018161
Description Picea abies pab-miR951 mature miRNA
Sequence 13 - UGUUCUUGACGUCUGGACCACG - 34
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20561211
    MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce
    "Yakovlev IA, Fossdal CG, Johnsen O"
    "New Phytol (2010) 187:1154-1169