Stem-loop sequence ame-mir-3791

Accession MI0016200
Description Apis mellifera miR-3791 stem-loop
Stem-loop
aau      a u c   c       a   cg       u    ggaa 
   auagag c g ugu ggaugaa ucu  uccggug gguu    a
   |||||| | | ||| ||||||| |||  ||||||| ||||     
   ugucuc g c gua ccuacuu agg  gggccac ccaa    a
--u      c c u   a       -   au       u    aaaa 
Get sequence
Deep sequencing
6599 reads, 1 experiments
Genome context
Coordinates (Amel_4.0) Overlapping transcripts
Group15.13: 54822-54914 [+]
intergenic
Clustered miRNAs
< 10kb from ame-mir-3791
ame-mir-3791 Group15.13: 54822-54914 [+]
ame-mir-279b Group15.13: 54931-55057 [+]
ame-mir-9c Group15.13: 55084-55222 [+]
ame-mir-2944 Group15.13: 55286-55410 [+]
ame-mir-318 Group15.13: 55451-55568 [+]
Database links

Mature sequence ame-miR-3791

Accession MIMAT0018570
Sequence

58 - 

ucaccggguaggauucaucca

 - 78

Get sequence
Deep sequencing 6565 reads, 1 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).