miRBase entry: ame-mir-3797

Stem-loop ame-mir-3797


Accession
MI0016212
Description
Apis mellifera ame-mir-3797 precursor miRNA


Sequence

cgggaCAGAACUGGCUCGUAUUUUAUUucaagugucaaaccuccucucgaaaccuccgcuccgugagagacguuucgcguccgagcggaaagaggagaaagaaaggaagaaauaaagagaggaaccgucguguaucgu
(((.(((..((.((.((.(.(((((((((.....((....(((((((.......((((((((((((((....)))))))...))))))).)))))))...))......)))))))))..).)).))))..))).))).

Structure
-   g   GA  U  C  G -A         -aagug  aaac       cgaaacc       ---       g 
 cgg aCA  AC GG UC U  UUUUAUUuc      uc    cuccucu       uccgcuc   cgugaga a
 ||| |||  || || || |  |||||||||      ||    |||||||       |||||||   |||||||  
 gcu ugu  ug cc ag a  gaaauaaag      ag    gaggaga       aggcgag   gcgcuuu c
u   a   gc  -  a  g ga         aaggaa  -aaa       ------a       ccu       g 


Annotation confidence Not enough data
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Genome context
CM000069.5: 3505663-3505800 [+]

Database links

Mature ame-miR-3797-5p

Accession MIMAT0018582
Description Apis mellifera ame-miR-3797-5p mature miRNA
Sequence 6 - CAGAACUGGCUCGUAUUUUAUU - 27
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226