miRBase entry: tca-mir-3807

Stem-loop tca-mir-3807


Accession
MI0016264
Description
Tribolium castaneum tca-mir-3807 precursor miRNA


Sequence

auuaauaauuaauucgggcgAUGGCGAUGAUGUGCGGCCAaaucgaaauucugaaaucauUUGCCGAACAUCCUCGCCACUAuccaguuaauuacaagc
.....(((((((((.(((...((((((.(((((.((((.((((.((..........)))))))))).))))).))))))...)))))))))))).....

Structure
auuaa         c   cgA      U     G    C    c  aauu 
     uaauuaauu ggg   UGGCGA GAUGU CGGC Aaau ga    c
     ||||||||| |||   |||||| ||||| |||| |||| ||     
     auuaauuga ccu   ACCGCU CUACA GCCG UUua cu    u
cgaac         -   AUC      C     A    -    -  aaag 


Annotation confidence Not enough data
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Genome context
ChLGX: 5788508-5788606 [-]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-3807
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3807-5p

Accession MIMAT0018636
Description Tribolium castaneum tca-miR-3807-5p mature miRNA
Sequence 21 - AUGGCGAUGAUGUGCGGCCA - 40
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3807-3p

Accession MIMAT0018637
Description Tribolium castaneum tca-miR-3807-3p mature miRNA
Sequence 61 - UUGCCGAACAUCCUCGCCACUA - 82
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696