miRBase entry: tca-mir-3809

Stem-loop tca-mir-3809


Accession
MI0016266
Description
Tribolium castaneum tca-mir-3809 precursor miRNA


Sequence

ucauuaauguuuggcggaaAUCAUAACUUGCUCGCUGAuguaauuuuaacagacGUCGGUCAGUUGGUUAUGAAuucugauaaauguuugcuc
.....((((((((.(((((.((((((((.(((.((((((((...........)))))))).))).)))))))).))))).)))))))).....

Structure
ucauu        g     A        U   C        aauu 
     aauguuug cggaa UCAUAACU GCU GCUGAugu    u
     |||||||| ||||| |||||||| ||| ||||||||    u
     uuguaaau gucuu AGUAUUGG UGA UGGCUGca    a
cucgu        a     A        U   C        gaca 


Annotation confidence Not enough data
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Genome context
ChLGX: 5796225-5796317 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from tca-mir-3809
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3809-5p

Accession MIMAT0018640
Description Tribolium castaneum tca-miR-3809-5p mature miRNA
Sequence 20 - AUCAUAACUUGCUCGCUGA - 38
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3809-3p

Accession MIMAT0018641
Description Tribolium castaneum tca-miR-3809-3p mature miRNA
Sequence 55 - GUCGGUCAGUUGGUUAUGAA - 74
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696