miRBase entry: tca-mir-3816

Stem-loop tca-mir-3816


Accession
MI0016274
Description
Tribolium castaneum tca-mir-3816 precursor miRNA


Sequence

gauagugcagauuuagaauuguauuuuaguugagcugggcaaauuuauuguggccgguuACAAGGCAUGUUUGGCAGCAAUuagcuuuuguaauaUUGCUGCCAUUCAUACCUUACaauuggucucaguguuuccaacaccgauaaaccuuaaucacuuuuuuagaauugua
.....(((((.(((((((..(((((...(((....(((.......(((((.((((((((..((((.(((..((((((((((..((....))...))))))))))..))).))))..)))))))).))))).........)))...)))...))).))..))))))).)))))

Structure
gauag     a       uu  -   uua   gagc   --gcaaauu     u        AC    C   UU          -ua  u 
     ugcag uuuagaa  gu auu   guu    ugg         uauug ggccgguu  AAGG AUG  UGGCAGCAAU   gc u
     ||||| |||||||  || |||   |||    |||         ||||| ||||||||  |||| |||  ||||||||||   ||  
     auguu agauuuu  ca uaa   caa    gcc         gugac cugguuaa  UUCC UAC  ACCGUCGUUa   ug u
-----     a       uu  c   uuc   -aua   acaaccuuu     u        CA    A   UU          uaa  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLGX: 5787077-5787248 [-]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-3816
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3816-5p

Accession MIMAT0018656
Description Tribolium castaneum tca-miR-3816-5p mature miRNA
Sequence 60 - ACAAGGCAUGUUUGGCAGCAAU - 81
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3816-3p

Accession MIMAT0018657
Description Tribolium castaneum tca-miR-3816-3p mature miRNA
Sequence 96 - UUGCUGCCAUUCAUACCUUAC - 116
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696