miRBase entry: tca-mir-3836a

Stem-loop tca-mir-3836a


Accession
MI0016299
Description
Tribolium castaneum tca-mir-3836a precursor miRNA
Gene family
MIPF0001231; mir-3836


Sequence

uuuuugaaaugucugucAGGUCUACCUCUGCUUAAGUUAAuauuuauuuaauuaUCACUGGGCAAGGUAGACUUUACagccguuucuucaa
.....((((((.((((.((((((((((.((((((((((((.......)))))).....)))))))))))))))).)))).)))))).....

Structure
uuuuu      u    c          C      -----      ua 
     gaaaug cugu AGGUCUACCU UGCUUA     AGUUAA  u
     |||||| |||| |||||||||| ||||||     ||||||  u
     cuuugc gaCA UUCAGAUGGA ACGGGU     uuaauu  u
aacuu      c    U          -      CACUa      ua 


Annotation confidence Not enough data
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Genome context
ChLG2: 1365524-1365614 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from tca-mir-3836a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836a-5p

Accession MIMAT0018704
Description Tribolium castaneum tca-miR-3836a-5p mature miRNA
Sequence 18 - AGGUCUACCUCUGCUUAAGUUAA - 40
Evidence experimental
SOLID [1]

Mature tca-miR-3836a-3p

Accession MIMAT0018705
Description Tribolium castaneum tca-miR-3836a-3p mature miRNA
Sequence 55 - UCACUGGGCAAGGUAGACUUUAC - 77
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696