miRBase entry: tca-mir-3836b

Stem-loop tca-mir-3836b


Accession
MI0016302
Description
Tribolium castaneum tca-mir-3836b precursor miRNA
Gene family
MIPF0001231; mir-3836


Sequence

uuuuugaaaugucugccAGGUCCACCUCUGCUUAAGUUGAUauuuauuuaauuaUCACUGGGCAAGGUAGACUCUacagccguuucuucaa
.....((((((.(((...((((.((((.((((((.((.((((..........)))))))))))))))).))))...))).)))))).....

Structure
uuuuu      u   ccA    C    C      A  U    uuua 
     gaaaug cug   GGUC ACCU UGCUUA GU GAUa    u
     |||||| |||   |||| |||| |||||| || ||||     
     cuuugc gac   UCAG UGGA ACGGGU CA CUau    u
aacuu      c   aUC    A    -      -  -    uaau 


Annotation confidence Not enough data
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Genome context
ChLG2: 2692194-2692284 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from tca-mir-3836b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836b-5p

Accession MIMAT0018710
Description Tribolium castaneum tca-miR-3836b-5p mature miRNA
Sequence 18 - AGGUCCACCUCUGCUUAAGUUGAU - 41
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3836b-3p

Accession MIMAT0018711
Description Tribolium castaneum tca-miR-3836b-3p mature miRNA
Sequence 55 - UCACUGGGCAAGGUAGACUCU - 75
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696