miRBase entry: tca-mir-2796

Stem-loop tca-mir-2796


Accession
MI0016303
Description
Tribolium castaneum tca-mir-2796 precursor miRNA
Gene family
MIPF0001057; mir-2796


Sequence

aucgagcuuucggugcagaagccgcuauuaacguggugacgcaagaguAGGGGUUUCUUUCGGCCUCCAGCGgauaauaaagaguuGUAGGCCGGCGGAAACUACUUGCuuuuacguugcauuaccuucgcugcggcuucccgucaaugaugcguuuu
(((((....)))))(((((((((((.......(((((((((.((((((((((((((((.(((((((.((((............)))).))))))).))))))).))))))))).)))..)))))).......))))))))..........))).....

Structure
aucgagcuuucggu   ----------        uauuaac      --   c         -       U       C    Ggaua 
              gca          gaagccgc       guggug  acg aagaguAGG GGUUUCU UCGGCCU CAGC     a
              |||          ||||||||       ||||||  ||| ||||||||| ||||||| ||||||| ||||      
              cgu          cuucggcg       cauuac  ugc uuuuCGUUC UCAAAGG GGCCGGA Guug     u
---------uuuug   aguaacugcc        ucgcuuc      gu   a         A       C       U    agaaa 


Annotation confidence Not enough data
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Genome context
ChLG2: 14198660-14198817 [-]

Database links

Mature tca-miR-2796-5p

Accession MIMAT0018712
Description Tribolium castaneum tca-miR-2796-5p mature miRNA
Sequence 49 - AGGGGUUUCUUUCGGCCUCCAGCG - 72
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-2796-3p

Accession MIMAT0018713
Description Tribolium castaneum tca-miR-2796-3p mature miRNA
Sequence 87 - GUAGGCCGGCGGAAACUACUUGC - 109
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696