Stem-loop sequence tca-mir-3840

Accession MI0016309
Description Tribolium castaneum miR-3840 stem-loop
Stem-loop 
cauca   -    c  ug   g         aa    g    auuu 
     gug aaug uu  uag ggguacugu  guac uacg    u
     ||| |||| ||  ||| |||||||||  |||| ||||     
     cac uugc aa  auc cucauggca  caug augc    u
uuuga   a    -  gu   a         ag    -    aauu
Get sequence
Deep sequencing
reads, experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 19008275-19008365 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3840
tca-mir-3889 chrLG3: 19008017-19008112 [+]
tca-mir-3841 chrLG3: 19008152-19008246 [+]
tca-mir-3840 chrLG3: 19008275-19008365 [+]
tca-mir-9c chrLG3: 19008388-19008494 [+]
tca-mir-2944a chrLG3: 19008516-19008604 [+]
tca-mir-279c chrLG3: 19008637-19008748 [+]
Database links

Mature sequence tca-miR-3840-5p

Accession MIMAT0018724
Sequence

19 -  

aggggguacuguaaguacgua

 - 39

Get sequence
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3840-3p

Accession MIMAT0018725
Sequence

54 -  

uaguacgaacgguacucacuau

 - 75

Get sequence
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).