miRBase entry: tca-mir-3841

Stem-loop tca-mir-3841


Accession
MI0016310
Description
Tribolium castaneum tca-mir-3841 precursor miRNA


Sequence

cucuuuucgcauuaucuuuCGUGCGAUCUUUCCAUUCCUACUUGuuguuugauaagUAGUACGGAAUUAUCUCACauuagauauugggaguuuuc
.....(((.((.(((((...(((.(((..((((....(((((((((....)))))))))...))))..))).)))...))))).)).))).....

Structure
cucuu   g  u     uuC   C   CU    AUUC         g 
     uuc ca uaucu   GUG GAU  UUCC    CUACUUGuu u
     ||| || |||||   ||| |||  ||||    |||||||||  
     gag gu auaga   CAC CUA  AAGG    GAUgaauag u
cuuuu   g  u     uua   U   UU    -CAU         u 


Annotation confidence Not enough data
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Genome context
ChLG3: 15203860-15203954 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-3841
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3841-5p

Accession MIMAT0018726
Description Tribolium castaneum tca-miR-3841-5p mature miRNA
Sequence 20 - CGUGCGAUCUUUCCAUUCCUACUUG - 44
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3841-3p

Accession MIMAT0018727
Description Tribolium castaneum tca-miR-3841-3p mature miRNA
Sequence 57 - UAGUACGGAAUUAUCUCAC - 75
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696