Stem-loop sequence tca-mir-3841

Accession MI0016310
Description Tribolium castaneum miR-3841 stem-loop
Stem-loop 
cucuu   g  u     uuc   c   cu    auuc         g 
     uuc ca uaucu   gug gau  uucc    cuacuuguu u
     ||| || |||||   ||| |||  ||||    |||||||||  
     gag gu auaga   cac cua  aagg    gaugaauag u
cuuuu   g  u     uua   u   uu    -cau         u
Get sequence
Deep sequencing
1536 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 19008152-19008246 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3841
tca-mir-3889 chrLG3: 19008017-19008112 [+]
tca-mir-3841 chrLG3: 19008152-19008246 [+]
tca-mir-3840 chrLG3: 19008275-19008365 [+]
tca-mir-9c chrLG3: 19008388-19008494 [+]
tca-mir-2944a chrLG3: 19008516-19008604 [+]
tca-mir-279c chrLG3: 19008637-19008748 [+]
Database links

Mature sequence tca-miR-3841-5p

Accession MIMAT0018726
Sequence

20 -  

cgugcgaucuuuccauuccuacuug

 - 44

Get sequence
Deep sequencing 778 reads, 2 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-3841-3p

Accession MIMAT0018727
Sequence

57 -  

uaguacggaauuaucucac

 - 75

Get sequence
Deep sequencing 756 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).