Stem-loop sequence tca-mir-279c

Accession MI0016312
Description Tribolium castaneum miR-279c stem-loop
Stem-loop 
-uu  g    --uuaaa          uuu          uu  g       uu  g 
   uc ccgc       uucauauuuu   cggguguucg  uc agucaca  gu a
   || ||||       ||||||||||   ||||||||||  || |||||||  || u
   ag ggcg       agguaugaag   gcuuacaagc  ag ucagugu  ua u
uuc  -    ccuaaaa          cuc          -u  a       uu  g
Get sequence
Deep sequencing
38038 reads, 2 experiments
Genome context
Coordinates (Tcas3.0) Overlapping transcripts
chrLG3: 19008637-19008748 [+]
intergenic
Clustered miRNAs
< 10kb from tca-mir-279c
tca-mir-3889 chrLG3: 19008017-19008112 [+]
tca-mir-3841 chrLG3: 19008152-19008246 [+]
tca-mir-3840 chrLG3: 19008275-19008365 [+]
tca-mir-9c chrLG3: 19008388-19008494 [+]
tca-mir-2944a chrLG3: 19008516-19008604 [+]
tca-mir-279c chrLG3: 19008637-19008748 [+]
Database links

Mature sequence tca-miR-279c-5p

Accession MIMAT0018730
Sequence

28 -  

cggguguucguuucgagucaca

 - 49

Get sequence
Deep sequencing 312 reads, 2 experiments
Evidence experimental; SOLID [1]

Mature sequence tca-miR-279c-3p

Accession MIMAT0018731
Sequence

65 -  

ugacuagaucgaacauucgcucg

 - 87

Get sequence
Deep sequencing 37722 reads, 2 experiments
Evidence experimental; SOLID [1]

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).