miRBase entry: tca-mir-3851b

Stem-loop tca-mir-3851b


Accession
MI0016325
Description
Tribolium castaneum tca-mir-3851b precursor miRNA
Gene family
MIPF0001201; mir-3851


Sequence

cggacgaaucauaaauuugauuacaAGUUGAUUUGGAGUAGUACUAUGguguuugguacucacaUAGUACGUUCCGAAUCAACUCGuuaacaaauuuaaauucaacaa
.....((((..((((((((...((.(((((((((((((..(((((((((.((.....)).).)))))))).))))))))))))).))...)))))))).)))).....

Structure
cggac    ca        auu  a             UA        - u  u 
     gaau  uaaauuug   ac AGUUGAUUUGGAG  GUACUAUG g gu u
     ||||  ||||||||   || |||||||||||||  |||||||| | || g
     cuua  auuuaaac   uG UCAACUAAGCCUU  CAUGAUac c ca g
aacaa    -a        aau  C             -G        a u  u 


Annotation confidence Not enough data
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Genome context
ChLG5: 235562-235669 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-3851b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851b-5p

Accession MIMAT0018756
Description Tribolium castaneum tca-miR-3851b-5p mature miRNA
Sequence 26 - AGUUGAUUUGGAGUAGUACUAUG - 48
Evidence experimental
SOLID [1]

Mature tca-miR-3851b-3p

Accession MIMAT0018757
Description Tribolium castaneum tca-miR-3851b-3p mature miRNA
Sequence 65 - UAGUACGUUCCGAAUCAACUCG - 86
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696