Stem-loop tca-mir-3851a-1

Accession

MI0016326

Description

Tribolium castaneum tca-mir-3851a-1 precursor miRNA

Gene family

MIPF0001201; mir-3851

Literature search

1 open access papers mention tca-mir-3851a-1
(1 sentences)

Sequence

cggacgaauuaugaauuuggcgccgAGUUGAUUUGGAGUAGUACUAUGguuuuggguacucacaUAGUACAUUCCGAAUCGACUCGuuaacaaauuuaaauucaacaa
.....(((((.((((((((..(.((((((((((((((((.((((((((..............)))))))))))))))))))))))).)..))))))))))))).....

Structure

cggac     a        gc c                A        guuuug 
     gaauu ugaauuug  g cgAGUUGAUUUGGAGU GUACUAUG      g
     ||||| ||||||||  | |||||||||||||||| ||||||||       
     cuuaa auuuaaac  u GCUCAGCUAAGCCUUA CAUGAUac      g
aacaa     -        aa u                -        acucau 

Annotation confidence Not enough data

Genome context

ChLG5: 235959-236066 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851a-1

Mature tca-miR-3851a-5p

• Accession: MIMAT0018758
• Description: Tribolium castaneum tca-miR-3851a-5p mature miRNA
• Sequence: 26 - AGUUGAUUUGGAGUAGUACUAUG - 48
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3851a-3p

• Accession: MIMAT0018759
• Description: Tribolium castaneum tca-miR-3851a-3p mature miRNA
• Sequence: 65 - UAGUACAUUCCGAAUCGACUCG - 86
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696