miRBase entry: tca-mir-3851d-1

Stem-loop tca-mir-3851d-1


Accession
MI0016337
Description
Tribolium castaneum tca-mir-3851d-1 precursor miRNA
Gene family
MIPF0001201; mir-3851


Sequence

aauuaaauuuaauauugAGUGGACAUGGGGUGGUACUGUguaauuuuugacccaUAGUACGGCCCAUGUUGGCUCaguaauaaauuacauu
.....((((((.((((((((.((((((((.(.((((((((............)))))))).))))))))).)))))))).)))))).....

Structure
aauua      a        G        G G        uaauu 
     aauuua uauugAGU GACAUGGG U GUACUGUg     u
     |||||| |||||||| |||||||| | ||||||||      
     uuaaau augaCUCG UUGUACCC G CAUGAUac     u
uuaca      a        G        - G        ccagu 


Annotation confidence Not enough data
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Genome context
ChLG6: 8819480-8819570 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tca-mir-3851d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851d-3p

Accession MIMAT0018779
Description Tribolium castaneum tca-miR-3851d-3p mature miRNA
Sequence 55 - UAGUACGGCCCAUGUUGGCUC - 75
Evidence experimental
Illumina [2]

Mature tca-miR-3851d-5p

Accession MIMAT0037388
Description Tribolium castaneum tca-miR-3851d-5p mature miRNA
Sequence 18 - AGUGGACAUGGGGUGGUACUGU - 39
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96