miRBase entry: tca-mir-1175

Stem-loop tca-mir-1175


Accession
MI0016357
Description
Tribolium castaneum tca-mir-1175 precursor miRNA
Gene family
MIPF0000715; mir-1175

Literature search
0 open access papers mention tca-mir-1175
(0 sentences)

Sequence

cgcuuugaucgagcucuguaaaguAAGUGGAGCAGUGGUCUCUUCACuugguuuuuauagUGAGAUUCAACUCCUCCAUCUCauuuuuugagcucguuuacaacg
.....(((.(((((((...(((((.(((((((.(((.(..(((.((((..........)))))))..).))).))))).)).)))))..))))))).))).....

Structure
cgcuu   u       ugu     A  -     C   G UC   U    uggu 
     uga cgagcuc   aaagu AG UGGAG AGU G  UCU CACu    u
     ||| |||||||   ||||| || ||||| ||| |  ||| ||||     
     auu gcucgag   uuuua UC ACCUC UCA C  AGA GUga    u
gcaac   u       -uu     C  U     C   A UU   -    uauu 


Annotation confidence Not enough data
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Genome context
ChLG4: 9316972-9317076 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-1175
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-1175-5p

Accession MIMAT0018818
Description Tribolium castaneum tca-miR-1175-5p mature miRNA
Sequence 25 - AAGUGGAGCAGUGGUCUCUUCAC - 47
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-1175-3p

Accession MIMAT0018819
Description Tribolium castaneum tca-miR-1175-3p mature miRNA
Sequence 61 - UGAGAUUCAACUCCUCCAUCUC - 82
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696