Stem-loop tca-mir-989

Accession

MI0016359

Description

Tribolium castaneum tca-mir-989 precursor miRNA

Literature search

2 open access papers mention tca-mir-989
(3 sentences)

Sequence

40346 reads, 301.0 reads per million, 31 experiments

uuuuugcucccaagguccCGCCACUAGGUCGCAUAACACgcauugucaacaccgUGUGAUGUGACGUAGUGGUAUGUcuaggggaguugccu
.....((((((..((.(..(((((((.(((((((.(((((...((....)).))))).))))))).)))))))..).))..)))))).....

Structure

uuuuu      aa  u cC       G       A     cau  u 
     gcuccc  gg c  GCCACUA GUCGCAU ACACg   ug c
     ||||||  || |  ||||||| ||||||| |||||   ||  
     ugaggg  uc G  UGGUGAU CAGUGUA UGUgc   ac a
uccgu      ga  U UA       G       G     --c  a 

Annotation confidence High

Genome context

ref|NC_007419.2|: 352039-352130 [-]

Mature tca-miR-989-5p

• Accession: MIMAT0018822
• Description: Tribolium castaneum tca-miR-989-5p mature miRNA
• Sequence: 19 - CGCCACUAGGUCGCAUAACAC - 39
• Evidence: experimental ; SOLID [1]

Mature tca-miR-989-3p

• Accession: MIMAT0018823
• Description: Tribolium castaneum tca-miR-989-3p mature miRNA
• Sequence: 55 - UGUGAUGUGACGUAGUGGUAUGU - 77
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696