miRBase entry: tca-mir-3870

Stem-loop tca-mir-3870


Accession
MI0016364
Description
Tribolium castaneum tca-mir-3870 precursor miRNA


Sequence

gccaauUCGAGGCACAAGAGGAAAAagagcgcaaaauacacaacuuuggcggagcucgAGCCACAAGUGCCCGGAAUauu
....((((..(((((..(.((.....((((((.(((........))).))...))))...)).)..)))))..))))...

Structure
gcca    GA     AA A  AAAAa    ---  a   uac 
    auUC  GGCAC  G GG     gagc   gc aaa   a
    ||||  |||||  | ||     ||||   || |||    
    UAAG  CCGUG  C CC     cucg   cg uuu   c
-uua    GC     AA A  --GAg    agg  g   caa 


Annotation confidence Not enough data
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Genome context
ChLG5: 10064558-10064637 [-]

Database links

Mature tca-miR-3870-5p

Accession MIMAT0018832
Description Tribolium castaneum tca-miR-3870-5p mature miRNA
Sequence 7 - UCGAGGCACAAGAGGAAAA - 25
Evidence experimental
SOLID [1]

Mature tca-miR-3870-3p

Accession MIMAT0018833
Description Tribolium castaneum tca-miR-3870-3p mature miRNA
Sequence 59 - AGCCACAAGUGCCCGGAAU - 77
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696