Stem-loop tca-mir-11

Accession

MI0016375

Description

Tribolium castaneum tca-mir-11 precursor miRNA

Gene family

MIPF0000252; mir-11

Sequence

caaacgcuuacauuguaaaugcauucUGGGAUUCUGACUGUGACCUGUgugugucugauucaCAUCACAGGCAGAGUUCUAGCUaugcguuuacagcuugcuucuc
.....((.....((((((((((((.(((((((((((.((((((..((((.((.....)).)))))))))).)))))))))))..))))))))))))...)).....

Structure

caaac  uuaca            -u           A      CC    u  g 
     gc     uuguaaaugcau  cUGGGAUUCUG CUGUGA  UGUg gu u
     ||     ||||||||||||  ||||||||||| ||||||  |||| || c
     cg     gacauuugcgua  GAUCUUGAGAC GACACU  ACac ua u
cucuu  --uuc            UC           G      --    u  g 

Annotation confidence Not enough data

Genome context

Unmapped45: 71290-71395 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-11

Mature tca-miR-11-5p

• Accession: MIMAT0018854
• Description: Tribolium castaneum tca-miR-11-5p mature miRNA
• Sequence: 27 - UGGGAUUCUGACUGUGACCUGU - 48
• Evidence: experimental ; SOLID [1]

Mature tca-miR-11-3p

• Accession: MIMAT0018855
• Description: Tribolium castaneum tca-miR-11-3p mature miRNA
• Sequence: 63 - CAUCACAGGCAGAGUUCUAGCU - 84
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696